PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017716m
Common NameCICLE_v10017716mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 339aa    MW: 37887 Da    PI: 7.3272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017716mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05174193120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  n++ H+
  Ciclev10017716m 174 FSCPLCFKTFNRYNNMQMHM 193
                      89*****************9 PP

2zf-C2H212.50.00044258280123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +C+k F  + + ++H +++
  Ciclev10017716m 258 FMCRKCSKAFAVRGDWRTHEKNC 280
                      89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66174201IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-5174193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SuperFamilySSF576674.35E-6239278No hitNo description
Gene3DG3DSA:3.30.160.606.0E-5245278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MADPYSNYFN GWLNFAALQH SSSSNNSSSN YYTPFAFNIY SSNNNNNNFC THYHQYSSPP  60
SPPLKEALPL LSLSPARHDG IVKADESSCS VMDTEESSAA YCDDHHESAS LTVSLHLGLA  120
ESSSADLISD YNNDNNNKEE VVTIASGRGG GCSLNKGQYW IPTPAQILIG PTQFSCPLCF  180
KTFNRYNNMQ MHMWGHGSQY RKGPESLRGS QPTAMLRLPC YCCAPGCRNN IDHPRSKPLK  240
DFRTLQTHYK RKHGIKPFMC RKCSKAFAVR GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD  300
HIKAFGNGHA SCGIDTFEDD EPASEIEQDN NESSRDID*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446092.10.0hypothetical protein CICLE_v10017716mg
RefseqXP_006470583.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-134ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A067F1P90.0A0A067F1P9_CITSI; Uncharacterized protein
TrEMBLV4U0D10.0V4U0D1_9R
STRINGPOPTR_0003s20400.11e-158(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-131C2H2 family protein